Understanding soil carbon fractions and their responses to the global warming is important for improving soil carbon management of natural altitudinal forest ecosystem. In this study, the contents of soil total organic carbon (SOC), soil labile organic carbon (LOC), and microbial biomass carbon (MBC) in soil upper layers (0–20 cm) were measured along a natural altitudinal transect in the north slope of Changbai Mountain. The results showed that under natural conditions the contents of SOC and LOC were largest in Betula ermanii forest (altitude 1996 m), moderate in spruce-fir forest (altitude 1350 m), and smallest in Korean pine mixed broad-leaf tree forest (altitude 740 m). MBC contents in different forest ecosystems decreased in the order of Betula ermanii forest, Korean pine mixed broad-leaf tree forest, and dark coniferous forest. In addition, the responses of SOC, LOC, and MBC to soil warming were conducted by relocating intact soil cores from high- to low-elevation forests for one year. As expected, the soil core relocation caused significant increase in soil temperature but made no significant effect on soil moisture. After one year incubation, soil relocation significantly decreased SOC contents, whereas the contents of LOC, MBC, and the ratios of LOC to SOC and MBC to SOC increased.