1045 samples collected in Boduo cave belong to 3 phyla, 6 classes, 13 orders, 27 families and 45 species or groups. 469 samples collected in Jialiang cave were subordinated to 3 phyla, 6 classes, 9 orders, 24 families and 52 species or groups. According to the analysis of the community diversity, the communities that have the highest values of richness, diversity, maximum diversity, evenness, dominance and community similarity are D (8.3223), D (3.4677), D (3.8286), D (0.9057), C (0.0404) and D-E (0.6611), respectively. According to the analysis of Pearson correlation, the content of organic matter in soil is strongly positively related to species number, species richness, community diversity and maximum community diversity, and is significantly positively related to the evenness. The content of CO₂ in air is opposite to the above result and is negatively related to species number, species richness, community diversity, maximum community diversity and evenness. The results indicate that the contents of organic matter and CO₂ are the important factors influencing the community structure of cave animals.