浙江苍南近海沉积物细菌物种多样性
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国家重点基础研究发展规划资助项目(2004CB719604-3); 浙江省科技重大资助项目(2006C13053); 我国近海海洋生物与生态调查研究资助项目(908-ZC-I-02)


Bacterial diversity of the sediment from Cangnan Large Fishing Bay
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    摘要:

    针对浙江苍南大渔湾近海海底沉积物样品(东经120°34′28.6″,北纬27°19′57.3″),采用非培养法构建分子文库,并结合纯培养法分离培养海洋微生物,基于克隆子和分离菌株的16S rRNA基因序列,开展系统发育学研究,分析近海沉积物细菌群落结构及多样性。序列分析结果表明,文库克隆子主要属于δ-变形杆菌纲(Deltaproteobacteria)和γ-变形杆菌纲(Gammaproteobacteria),部分序列与已报道物种的相似性较低,表明浙江苍南近海环境样品具有较好的微生物多样性,蕴藏着大量未知细菌物种资源。研究还分离获得细菌79株,丰富了近海微生物资源库。分子鉴定结果表明,这些菌株主要属于α-变形杆菌纲(Alphaproteobacteria)、γ-变形杆菌纲(Gammaproteobacteria)和芽孢杆菌纲(Bacilli)。通过非培养和可培养数据结合发现,浙江苍南近海沉积物中的细菌优势类群为δ-变形杆菌和γ-变形杆菌。

    Abstract:

    Bacterial community and diversity in marine sediment from Cangnan Large Fishing Bay (27°19′57.3″N, 120°34′28.6″E) were investigated by combining culture-independent with culture-dependent methods. By the culture-independent method, DNA was extracted directly from the environment. Molecular library containing bacterial 16S rRNA gene was constructed. 25 clones were selected and the cloned 16S rRNA gene fragments were sequenced. Finally, 18 sequences were phylogenetically analyzed based on the 16S rRNA gene. The sequenced clones fell into five phylums of the domain Bacteria: Proteobacteria, Firmicutes, Chloroglexi, Nitrospirae and Acidobacteria, and most of them shared relatively low similarity with described bacteria. The results revealed that the library was dominated by Gammaproteobacteria and Deltaproteobacteria of Proteobacteria. By the culture-dependent method, 79 bacteria strains were isolated. The 16S rRNA gene sequences were determined and analyzed. Most of the isolates were closely related to described bacteria, and fell into three lineages: Alphaproteobacteria and Gammaproteobacteria of Proteobacteria, and Bacilli of Firmicutes. However, some sequences showed low affiliation with the sequences from described species (less than 97%), suggesting the presence of some novel taxa. The sequences from culture-independent and culture-dependent methods were assigned to operational taxonomic units (OTUs) based on sequence analysis. Subsequent analysis using Shannon index indicated that the bacterial diversity from the culture-independent method was significantly higher than that from the culture-dependent method. Integrated the results of culture-independent with culture-dependent methods, the Gammaproteobacteria and Deltaproteobacteria were the dominant bacterial groups in sediment from Cangnan Large Fishing Bay.

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霍颖异,许学伟,王春生,杨俊毅,吴敏*.浙江苍南近海沉积物细菌物种多样性.生态学报,2008,28(10):5166~5172

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