东方粘虫(Pseudaletia separata(Walker))微卫星富集文库的构建与分析
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国家自然科学基金资助项目(30571202)


Construction and identification of enriched microsatellite library from Pseudaletia separata genome
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    摘要:

    根据生物素与链亲和素的强亲和性原理,用包被链亲和素的磁珠亲和捕捉与生物素标记的微卫星寡核苷酸探针(CA)15、(GA)15、(GTT)12、(GAT)12、(TAGA)8 和 (GTGA)8退火结合的含接头和微卫星序列的单链粘虫基因组DNA限制性酶切片段,获得单链目的片段。经PCR扩增形成双链后连接到pGEM-T 载体上,再转化到DH5α热感受态细胞中,首次成功构建粘虫基因组微卫星富集文库。随机抽样(16次抽样,每库共12~114个克隆)测序发现,6个文库总的微卫星阳性克隆率30.07%,CA/GAT/GTT 等3个文库的阳性克隆率达到40%以上。单次抽样最高阳性克隆率达到56%。粘虫微卫星富集文库的建立和高多态性微卫星单拷贝位点的筛选将为粘虫的生态遗传学研究、连锁图谱构建、分子进化和系统发育研究等提供大量遗传标记,对昆虫迁飞的分子生态研究也有重大意义。

    Abstract:

    We constructed the first microsatellite-enriched library of the oriental armyworm (Pseudaletia separata) according to the strong affinity between biotin and streptavidin. Briefly, the approach involved adaptation of 300-700bp enzyme-digested fragments to adaptors, affinity capture of microsatellite repeat using biotinylated oligo-nucleotide probes ((CA)1, (GA)1, (GTT)12, (GAT)12, (TAGA)8, (GTGA)8) attached to streptavidin-coated magnetic beads, PCR amplification of captured moleculars using 21-mer primers complementary to the adapters, ligation of PCR products into pGEM-T, transformation of recombinant plasmids from each of the six preparations into DH5α competent cells. The sequencing results of 16 random samplings showed that 30.07% of the clones contained microsatellite sequences, more than 40% for CA, GTT and CAT libraries, a maximum of 56% among 16 samplings. High polymorphic single-copy microsatellite loci will be detected from six libraries. A large number of such loci are crucial to investigate ecological genetics, linkage mapping, molecular evolution and phylogeny et al. of oriental armyworm and will contribute to molecular ecology of insect migration.

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张国彦,翟保平.东方粘虫(Pseudaletia separata(Walker))微卫星富集文库的构建与分析.生态学报,2008,28(8):3860~3867

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